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To our knowledge, this is the first demonstration of N-glycans affecting protein stability to such a huge extent, except for a report on a fucosylated peptide PMP-C (Pars interecrebralis major peptide C, a 36-residue peptide)
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Deficient in vitro and in vivo phagocytosis of apoptotic T cells by resident murine alveolar macrophages
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The influence of inhibitor-binding on global enzyme molecular dynamicsAlthough several studies using different techniques have shown a modification of global protein molecular dynamics on an Ångström-nanosecond scale upon inhibitor-binding, we were not able to detect any significant differences between the native and the inhibited HuBChE, at comparable degrees of hydration, up to ~334 K (61°C)
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Intermolecular forces in bovine serum albumin solutions exhibiting solidlike mechanical behaviors
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A schematic representation of the TTR misfolding reaction from the unfolded state through the A-state is presented in Fig
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The fibers are considerably thicker (the average diameter judged from the height data is 9
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Entropy Calculation of HIV-1 Env gp120, its Receptor CD4, and their Complex: An Analysis of Configurational Entropy Changes upon ComplexationHsu, Shang-Te DABSTRACTThe HIV-1 gp120/CD4 interaction shows a large, unprecedented entropy/enthalpy compensation, with the capacity to fine-tune recognition over a broad range of affinity
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. Equilibrium NMR studies of unfolded and partially folded proteins
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. 3 A compares the effect of 2 µM BSA on the ANS intensity in supercooled liquid and frozen states at -5°C
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. Because the spectrum reflects the hydrophobicity of the binding site, shifting to the blue in less polar environments (30,31), the above correlation suggests that extensive binding of ANS is associated with the exposure of hydrophobic regions of the macromolecule that are generally buried and inaccessible to the probe
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. Such a correlation diagram of R^sub ex^ and ΔR^sub ex^ is shown in Fig
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. Electron microscopy, gel electrophoresis, and differential scanning calorimetry show that such fusion involves lipid vesicle formation and dissociation of monomolecular lipid-poor protein
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.The estimation of configurational entropy from molecular dynamics trajectories was first proposed by Karplus and Kushick (1981) using a quasiharmonic method
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. This increase, however, only amounts to Due to the large number of atoms of gp120, the conformational sampling is not yet complete within the 8-ns simulation
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. Although in some cases, conventional structural parameters such as atom-positional fluctuations may fail to identify thermodynamic differences between two states, the conformational entropy analysis of combined trajectories can provide a complementary way of evaluating spatial distributions and their statistical weight
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.R] ABC reagent (avidin DH + biotinylated horseradish peroxidase/ PBS, 100 [micro]L) was added according to the direction of VECTASTAI[N
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.DISCUSSIONComparison of spFRET histograms and ensemble trFRET measurementsOur spFRET results for the wild-type ribozymes show the presence of extended (undocked) and docked conformations, with relative populations that are strongly dependent on the Mg^sup 2+^ concentration
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. Since the folding observed in the SL 4WJ ribozyme construct occurs in the absence of loop-loop interactions, the conformational change must be associated with the 4WJ helical junction element itself
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